Scaffold GOS2239_1008187

Overview

Basic Information

• Taxon OID: 3300001962
• Scaffold ID: GOS2239_1008187
• Source Dataset Name: Marine microbial communities from Cocos Island, Costa Rica - GS023
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2140
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Cocos Island, Costa Rica
• Coordinates
  • Lat. (^o): 5.64
  • Long. (^o): -86.56528
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006662	Metagenome / Metatranscriptome	367	Y
F036739	Metagenome	169	Y
F047121	Metagenome	150	N
F097516	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2239_10081871	F047121	N/A	RGGLIMYSRKQFDADVKKLKELIRACEELEVNNRNYTNSIHFENQINESRYYK*
GOS2239_10081872	F006662	GAGG	VRTLTAKEYEVISQIYNSTDENEANLSFQFGIQNDLYYQLFHSYSETKKEGNQ*
GOS2239_10081874	F036739	AGGA	MITPISPLVVNKNRRASFPQKVTQIVEKYVKKYIKTLINVFLNITKRFILFLKSVINSK*
GOS2239_10081875	F097516	N/A	MVINSQLAPCQQSYRITLDLTVDDDFNPRQIDFNKVFNLSEWESINTHIEEF*