NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2239_1008187

Scaffold GOS2239_1008187


Overview

Basic Information
Taxon OID3300001962 Open in IMG/M
Scaffold IDGOS2239_1008187 Open in IMG/M
Source Dataset NameMarine microbial communities from Cocos Island, Costa Rica - GS023
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2140
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameCocos Island, Costa Rica
CoordinatesLat. (o)5.64Long. (o)-86.56528Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006662Metagenome / Metatranscriptome367Y
F036739Metagenome169Y
F047121Metagenome150N
F097516Metagenome104N

Sequences

Protein IDFamilyRBSSequence
GOS2239_10081871F047121N/ARGGLIMYSRKQFDADVKKLKELIRACEELEVNNRNYTNSIHFENQINESRYYK*
GOS2239_10081872F006662GAGGVRTLTAKEYEVISQIYNSTDENEANLSFQFGIQNDLYYQLFHSYSETKKEGNQ*
GOS2239_10081874F036739AGGAMITPISPLVVNKNRRASFPQKVTQIVEKYVKKYIKTLINVFLNITKRFILFLKSVINSK*
GOS2239_10081875F097516N/AMVINSQLAPCQQSYRITLDLTVDDDFNPRQIDFNKVFNLSEWESINTHIEEF*

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