Scaffold GOS2239_1002062

Overview

Basic Information

• Taxon OID: 3300001962
• Scaffold ID: GOS2239_1002062
• Source Dataset Name: Marine microbial communities from Cocos Island, Costa Rica - GS023
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2277
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Cocos Island, Costa Rica
• Coordinates
  • Lat. (^o): 5.64
  • Long. (^o): -86.56528
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F012583	Metagenome / Metatranscriptome	279	Y
F023620	Metagenome / Metatranscriptome	209	Y
F049045	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2239_100206210	F023620	GGAGG	MKTALSTYDLSTVHYLCSYYKDNANLDKEDIDYINELQNRVNSLMEVK*
GOS2239_10020623	F001026	GGAG	MKHTIELDDMELTALIIHLEGQNEMMCESRLNSSNPSETPDREEVLLNKVYEKAFTIGWDKHINPKVDFNLIKNQDRIYKYK*
GOS2239_10020626	F049045	AGAAGG	MTVAELVEKLLDFDGDEEILFYYLKDNILTNALLEDINSYGMGIEFTIQDTHEFMEENSCHN*
GOS2239_10020629	F012583	GGAGG	MSLSDQVKVQAFDKYIMRGGDQSLQNIEDLCDFGFNMCQLGYDTETFNDVVIDVIRKLTERLEDNK*