Scaffold GOS2240_1047237

Overview

Basic Information

• Taxon OID: 3300001961
• Scaffold ID: GOS2240_1047237
• Source Dataset Name: Marine microbial communities from Dirty Rock, Cocos Island, Costa Rica - GS025
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3046
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Dirty Rock, Cocos Island, Costa Rica
• Coordinates
  • Lat. (^o): 5.552778
  • Long. (^o): -87.087776
  • Depth (m): 1.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004453	Metagenome	437	Y
F005670	Metagenome / Metatranscriptome	393	Y
F068937	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2240_10472372	F004453	N/A	MYTQIFLIMLIDFTEAELETIANAMEDYILYDDEKLNTDLLFGGLSVERRCLSIQNKIDTLFCKIRG*
GOS2240_10472377	F005670	N/A	MPLLSRQEYNLILRSFDSYHTFMNDKERELREQLEEKLYNNFYNPKDKVATNLVNLPALYDIQTEKDKSEDNVIKSLNFRS*
GOS2240_10472379	F068937	GAGG	MNKRATEYDLNKEQFEQLMDKYIDTIVDSMSMEDLQAYVIDDMNDYLYKCSESELINEIKYTLDEEMLEEFIKQIKGKI*