Scaffold GOS2240_1033794

Overview

Basic Information

• Taxon OID: 3300001961
• Scaffold ID: GOS2240_1033794
• Source Dataset Name: Marine microbial communities from Dirty Rock, Cocos Island, Costa Rica - GS025
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1773
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Dirty Rock, Cocos Island, Costa Rica
• Coordinates
  • Lat. (^o): 5.552778
  • Long. (^o): -87.087776
  • Depth (m): 1.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005670	Metagenome / Metatranscriptome	393	Y
F049690	Metagenome	146	Y
F068937	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2240_10337943	F005670	N/A	MNLLSRQEYNLILRSFDKYDVYMNAKEKELREDLEEKLYNNFYNPKDKVAQTDVEDNVIKSLNFRS*
GOS2240_10337944	F049690	N/A	MPTISTNKELLNVINEDVENVKQFTKMPAISDELYNELVEEFNNDSYYFFN*
GOS2240_10337945	F068937	GAGG	MNQRATEYDLNNEQFEQLIDKYITTIVDSMSMEDFQQYVRNDMWDYLGNCSFSGVLNEIKYTLDDEMLDEFVKQIKGE*