NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2247_1066105

Scaffold GOS2247_1066105


Overview

Basic Information
Taxon OID3300001959 Open in IMG/M
Scaffold IDGOS2247_1066105 Open in IMG/M
Source Dataset NameMangrove swamp microbial communities from Isabella Island, Equador - GS032
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameIsabella Island, Equador
CoordinatesLat. (o)-0.5938889Long. (o)-91.06944Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022202Metagenome / Metatranscriptome215N
F024324Metagenome / Metatranscriptome206N

Sequences

Protein IDFamilyRBSSequence
GOS2247_10661051F022202GAGLKNKDQKILQNWIDTLQGISVRGMDSKSKLEARLLRKGWLENSKKVEDKIPDHDAAFYQNIKEALKKKKDKTASKNLWSSFFENKFKAFLVIIMGTGVVYASKKTYDGFVSVAEELNHIVLAKDTTKNK
GOS2247_10661053F024324N/AIINTDLIGVFDLATLKVAYFGNFIQGMIFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAKELCEGIIKTTSL*

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