Scaffold GOS2247_1060666

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2247_1060666

Scaffold GOS2247_1060666

Overview

Basic Information
Taxon OID	3300001959 Open in IMG/M
Scaffold ID	GOS2247_1060666 Open in IMG/M
Source Dataset Name	Mangrove swamp microbial communities from Isabella Island, Equador - GS032
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1316
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Isabella Island, Equador
Coordinates	Lat. (^o)	-0.5938889	Long. (^o)	-91.06944	Alt. (m)		Depth (m)	.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055270	Metagenome / Metatranscriptome	139	Y
F077948	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2247_10606662	F077948	GAGG	MKDYAHKLHKPRPVKPWHDVAREMTENIIFVALVVFCLIIIVKAVI*
GOS2247_10606663	F055270	AGGGGG	MELLHDREFKYYDKNTDSVDMVNYIKTIMARNFIEEIYFLCLKYPQQFNQALTEIEYLYSKKLNAFVYPPKDYIQYKQGQEQLREVNQ*

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