NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2247_1008154

Scaffold GOS2247_1008154


Overview

Basic Information
Taxon OID3300001959 Open in IMG/M
Scaffold IDGOS2247_1008154 Open in IMG/M
Source Dataset NameMangrove swamp microbial communities from Isabella Island, Equador - GS032
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1477
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameIsabella Island, Equador
CoordinatesLat. (o)-0.5938889Long. (o)-91.06944Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062827Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
GOS2247_10081542F062827GAGGMQLSITQFQADLIKNSLKLYNIEMLSSSKEWKEYDNLFDKLADLSDTSRADDFYKQSHPNRNGKDLDLL*

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