NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2232_1014545

Scaffold GOS2232_1014545


Overview

Basic Information
Taxon OID3300001958 Open in IMG/M
Scaffold IDGOS2232_1014545 Open in IMG/M
Source Dataset NameMarine microbial communities from Gulf of Mexico, USA - GS016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1511
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameGulf of Mexico, USA
CoordinatesLat. (o)24.174723Long. (o)-84.344444Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064809Metagenome128N

Sequences

Protein IDFamilyRBSSequence
GOS2232_10145451F064809GGAGMLNTTFTGNITFAEIVEQDAKVENPFLKIVVAVNDVNDNGLRITVRTKNGLLEAARNGENLVGTRVVINGTIDIASIRSHYVDENGDLVALKQPNARVYANA

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