NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2250_1028914

Scaffold GOS2250_1028914


Overview

Basic Information
Taxon OID3300001957 Open in IMG/M
Scaffold IDGOS2250_1028914 Open in IMG/M
Source Dataset NameMarine microbial communities from Wolf Island, Equador - GS035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1496
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameWolf Island, Equador
CoordinatesLat. (o)1.3891667Long. (o)-91.81695Alt. (m)Depth (m)1.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009959Metagenome / Metatranscriptome310Y
F023317Metagenome / Metatranscriptome210Y
F066793Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
GOS2250_10289141F066793N/ANQAELTQQCINHVLNYPGEANGVFMTLSKSQQDDVYELLNQVL*
GOS2250_10289142F023317N/AMNNLNTTIDKVAMSEFDMHYYQLGDNEKQWCHDEMVNNPKWIDPEWKQPGYESETDKLCKSLGIFDYKGGKPGTIITN*
GOS2250_10289145F009959N/AMTEQDVIDKVCDRMVMTLYNELDYYMFEELGHTETDDKYVKEADRLARLIIKELIK*

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