Scaffold GOS2266_1008305

Overview

Basic Information

• Taxon OID: 3300001956
• Scaffold ID: GOS2266_1008305
• Source Dataset Name: Marine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2480
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Rangirora Atoll, Polynesia Archipelagos
• Coordinates
  • Lat. (^o): -15.143611
  • Long. (^o): -147.435
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2266_100830510	F008747	AGG	MAPVEESRERPAGSEGETDQPVMAPPLAEGVTVVMAVSLVNVNEFGL
GOS2266_10083055	F032291	N/A	MAPVEESIERPEGRDGETDHDVTVPPLDVGVTAVMAVFLTKDNELGLYVMDDGAMSLTAMVTEAVVLPPVLLAVIV*
GOS2266_10083056	F032291	AGGA	VTAVGVPEIAPVEVSNERPAGRDGETDQLVTGPPLTLGVTVVMAVPLVNVKAFGLKVKEEGATSFTTIVTSTVLVPPVLLAVTV*
GOS2266_10083057	F008747	GAGG	VGVPLIAPVEVSNERPAGKDGETDQEMTVPPVEVGVTVVIAVPLVSVSELGL*
GOS2266_10083058	F032291	AGGA	VMAVGVPEMAPVDESSANPAGNEGETDHVVTVPPLDVGVTVVIAVPLVSVSELGLYDRDEGAMSFTVMLTVAVVLPPVLLPVMV*