Scaffold GOS2237_1034279

Overview

Basic Information

• Taxon OID: 3300001955
• Scaffold ID: GOS2237_1034279
• Source Dataset Name: Marine microbial communities from Gulf of Panama, Panama - GS021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Gulf of Panama, Panama
• Coordinates
  • Lat. (^o): 8.129167
  • Long. (^o): -79.69111
  • Depth (m): 1.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010536	Metagenome / Metatranscriptome	302	N
F082620	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2237_10342794	F010536	GAGG	MIDVMLSKATDGMLIAELLNRRNDKEVPLFMGKSILLPSGQQQLIAILPNIQILTNVEQEEE*
GOS2237_10342795	F082620	GAGG	MDFSDMEYNDRVEGGVGKQAEDIFEQHLTDLGLVKQKDWLKAATSPWEHSIDFFWYYTDIIIVPDYIFNRRDKLYLTEVKGTKKIKFSDMVKLRELYERAKDYPEVKVGITYVNIKTKEVKWYSFDEVLKMWD