Scaffold GOS2237_1005898

Overview

Basic Information

• Taxon OID: 3300001955
• Scaffold ID: GOS2237_1005898
• Source Dataset Name: Marine microbial communities from Gulf of Panama, Panama - GS021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1704
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Gulf of Panama, Panama
• Coordinates
  • Lat. (^o): 8.129167
  • Long. (^o): -79.69111
  • Depth (m): 1.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067840	Metagenome	125	N
F073669	Metagenome	120	N
F103425	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2237_10058982	F103425	N/A	MSDKTYKTYNVEAKGTIKLCMDVEASSQEEAEAMADQVKEMKYGKYDPWIPRFDYYDLEITSVRPEPDRSCMRPFIPGYDD*T*
GOS2237_10058983	F073669	GGA	MIEPNMQLLEAMRVEANLCYERGDDEDGDALVKSIFDQIFPGLVEEAKRNPTFIYQLIVLANTEKDEMKATHYKSIILYLKDNGVEF*
GOS2237_10058986	F067840	GAGG	MVKKLGKRYRQTKQAIYTAYDIISLIVILLSFDKLLTSKSRSVEPKQVARLIEKLPKIKKILYDSAPWWAFDDMDVKSK*