Scaffold GOS2224_1054251

Overview

Basic Information

• Taxon OID: 3300001952
• Scaffold ID: GOS2224_1054251
• Source Dataset Name: Marine microbial communities from Newport Harbor, Rhode Island, USA - GS008
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2815
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Newport Harbor, Rhode Island, USA
• Coordinates
  • Lat. (^o): 41.485832
  • Long. (^o): -71.35111
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F016342	Metagenome / Metatranscriptome	248	Y
F037476	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2224_10542513	F004688	N/A	MIKEYTMPCIHMNGSDENSLRRQYNDLFCAVSDAQVKLLYDTDFHQRDYYPLGDEAWDKAFKEREEVKEAINTVYQYAKQHIHFLDYGKEPLPDED*
GOS2224_10542515	F037476	N/A	MNKTPTVKLTGVFPKTFRVTKCETGRADCNFEYATKKKKVFFEVCLHGAVELHEHFTELGYTELAPKLEFPTWHPNYKKS*
GOS2224_10542516	F016342	GAG	MKSKDYHALKDEFLSKAVEKKEIIKQSSQGNFGMYDVLPVNIARTVSEACDRFFESRNIRYGSAWFHDRNDRKKKIQQAKDEQNTNS*