Scaffold GOS2224_1008516

Overview

Basic Information

• Taxon OID: 3300001952
• Scaffold ID: GOS2224_1008516
• Source Dataset Name: Marine microbial communities from Newport Harbor, Rhode Island, USA - GS008
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1502
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Newport Harbor, Rhode Island, USA
• Coordinates
  • Lat. (^o): 41.485832
  • Long. (^o): -71.35111
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F004549	Metagenome / Metatranscriptome	433	Y
F048277	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2224_10085162	F048277	GGAGG	MFHLWHILAIVGLFVLGFVLGRLSMKRKYEAKVEELENRKESIEWAARHH*
GOS2224_10085163	F004549	AGGAG	MNIKKFKSVAVAIETYKLLKKIAADDDRSAGMQITYLVKQEAKKRKLAA*
GOS2224_10085164	F001689	AGGAG	MKLKREYEMTFKEGFRLGVRLTRAKAYIENARDAKRLGDETMAELYTEFAQEWNDLARNAGRKFTPSAAHEPEQSAFDFGDIEMQEHLAKLPHQLKETG*