Scaffold GOS2224_1006876

Overview

Basic Information

• Taxon OID: 3300001952
• Scaffold ID: GOS2224_1006876
• Source Dataset Name: Marine microbial communities from Newport Harbor, Rhode Island, USA - GS008
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Newport Harbor, Rhode Island, USA
• Coordinates
  • Lat. (^o): 41.485832
  • Long. (^o): -71.35111
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F004166	Metagenome / Metatranscriptome	450	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2224_10068762	F004166	N/A	MKKLFLLFFLVLLISCSDHQANDSWGSYATNKETQKQEFWFTSYKTREECIADMSWQLEGEDDPNKKRISYLHTKPYGCHFMSNNKWLSIYYYLVYKDEGLGCLWESSNPNVRIKYSVTLKTFVNTPEQGRCILGD*
GOS2224_10068763	F002915	AGG	MKGLFLLSLIIPIIAQGKEVFTNDQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICSDQNMIMQLEKKAMEAE*