NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2249_1048641

Scaffold GOS2249_1048641


Overview

Basic Information
Taxon OID3300001951 Open in IMG/M
Scaffold IDGOS2249_1048641 Open in IMG/M
Source Dataset NameMarine microbial communities from North Seamore Island, Equador - GS034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameNorth Seamore Island, Equador
CoordinatesLat. (o)-0.38305557Long. (o)-90.279724Alt. (m)Depth (m)2.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098228Metagenome104N

Sequences

Protein IDFamilyRBSSequence
GOS2249_10486415F098228AGGVKVGDLVIYKGLAVGWTDEWDEYLPSAKLNEVGEDIPGVVLSLYCKCKPGEDRWWLEGGCQCVADVLWNGDPIPRGHVTKHLVVLNEAR*

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