NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2249_1023310

Scaffold GOS2249_1023310


Overview

Basic Information
Taxon OID3300001951 Open in IMG/M
Scaffold IDGOS2249_1023310 Open in IMG/M
Source Dataset NameMarine microbial communities from North Seamore Island, Equador - GS034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1526
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameNorth Seamore Island, Equador
CoordinatesLat. (o)-0.38305557Long. (o)-90.279724Alt. (m)Depth (m)2.1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028778Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
GOS2249_10233103F028778AGTAGMTYDWTLLQTLIFIITPYFLMLALSSKDEDDDDNMDGGLMTPAYQGI*

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