Scaffold GOS2227_1035463

Overview

Basic Information

• Taxon OID: 3300001950
• Scaffold ID: GOS2227_1035463
• Source Dataset Name: Marine microbial communities from Delaware Bay, New Jersey, USA - GS011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1716
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Delaware Bay, New Jersey, USA
• Coordinates
  • Lat. (^o): 39.417778
  • Long. (^o): -75.504166
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045069	Metagenome	153	N
F081291	Metagenome / Metatranscriptome	114	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2227_10354631	F045069	N/A	SKAKGQEHMRYLLLLLAAPAMAAAPDYLTYTNDISVQTVLTQDRPSWCHGMKMAFDIDGLQRAYYGCWAASQEFVHIEMLDGSKRIIQMSKFTKPKEETK*
GOS2227_10354633	F081291	GGAGG	VKRIDYWKAKLPAARAEERIRQKELNQMARAFERAVEKVTEIEQRIEDEKAKLARPE*
GOS2227_10354637	F102853	GAG	MKELVLVYYAAIVVATVGFLAFFIPEPRRPTAAECGVSEIAPDMSTRDREVCRQLRQHRHRM*