NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2227_1018487

Scaffold GOS2227_1018487


Overview

Basic Information
Taxon OID3300001950 Open in IMG/M
Scaffold IDGOS2227_1018487 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Bay, New Jersey, USA - GS011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1568
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameDelaware Bay, New Jersey, USA
CoordinatesLat. (o)39.417778Long. (o)-75.504166Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104704Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
GOS2227_10184872F104704AGGMSTTMPKQPVTANPEQKQPQPKRPNEQGSFSVEAHVRIFDPKTREVYMEGRA*

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