NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2238_1024633

Scaffold GOS2238_1024633


Overview

Basic Information
Taxon OID3300001949 Open in IMG/M
Scaffold IDGOS2238_1024633 Open in IMG/M
Source Dataset NameMarine microbial communities from Panama City, Panama - GS022
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1592
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NamePanama City, Panama
CoordinatesLat. (o)6.492778Long. (o)-82.90389Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053229Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
GOS2238_10246331F053229AGGAGMKKDNVIEFKKPTKRKKPVLDKEGKSFVARLPYPITIHTIVDIVERMGIEHEGTVLPGLKFIQRKITKLEMEKDDE*

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