Scaffold GOS2218_1039428

Overview

Basic Information

• Taxon OID: 3300001947
• Scaffold ID: GOS2218_1039428
• Source Dataset Name: Marine microbial communities from the Gulf of Maine, Canada - GS002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3006
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Gulf of Maine, Canada
• Coordinates
  • Lat. (^o): 42.503056
  • Long. (^o): -67.24
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F031261	Metagenome	183	Y
F047975	Metagenome / Metatranscriptome	149	Y
F068823	Metagenome	124	N
F100938	Metagenome	102	N
F102056	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2218_103942810	F102056	GAGG	MNKEFEKELVELLNKYYSTNWDYVWEFIGDTIETKLWLGEEVDDDV*
GOS2218_103942812	F003051	AGGAGG	MRTKILKNKVTIDMSVSEYDTLFKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNADTYRYVKRGNK*
GOS2218_103942813	F068823	AGGAGG	MSRTYNEYYFEKLDIMDKLNEIGLLTRLLRIVYKEQGLDTIKYLVCNKTNRNFIWFNDDMMTDIINDIEEGVSYEN*
GOS2218_10394282	F047975	AGGAGG	MRITKEEWAENTVDDMAWKDLYQIAYDVMLDNVKDMSDKEFKEYLIECEYEEDDDDS*
GOS2218_10394285	F031261	N/A	MTVEKNSD*VLEQLNKLQQVKQSVSLLNKHSTKKHYVKCQGRWGRKNPDYNQRTIPFCPLDKAVKWDVYIYQAR*
GOS2218_10394287	F100938	AGGAGG	MSDWIEGDKPKYIECIYETVIEFDLEELGIDYDTIDDYYIKYGKLTVTFKDGTTSWYDGDEGETDYKWARYENVLDESWNKVEGLNG*