Scaffold GOS2218_1001409

Overview

Basic Information

• Taxon OID: 3300001947
• Scaffold ID: GOS2218_1001409
• Source Dataset Name: Marine microbial communities from the Gulf of Maine, Canada - GS002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1608
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Gulf of Maine, Canada
• Coordinates
  • Lat. (^o): 42.503056
  • Long. (^o): -67.24
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F011253	Metagenome	293	Y
F089158	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2218_10014092	F089158	AGGAGG	MKESKVNWHGQDNYNMNCDIEELEKLGFVCSSYNNDLAPSYMNKKENIQIFFFDLESDEMKAEESKFKYSLMKLDEHGEYSSDIGQTNSFDEMIELVKKNEND*
GOS2218_10014093	F004629	AGGA	MIPTKLTIDQLDNYFQTATYVERFMPSPLNMKNKRTEMFMVIDKLYGIGKDKDSYKNEDKPKLKIRLNGEQIQIYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKQFFLPSSHEKVRADYYKALDELKSLYNRKGYKFICK*
GOS2218_10014094	F011253	GAGG	LNKKLEIDKIIKNFAKNKSLPYSAAITKIKKDRKGYFQAKDIKQKSKSLSTDRFQQYLKDIQENDTD*