NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2244_1057482

Scaffold GOS2244_1057482


Overview

Basic Information
Taxon OID3300001946 Open in IMG/M
Scaffold IDGOS2244_1057482 Open in IMG/M
Source Dataset NameMarine microbial communities from North James Bay, Santigo Island, Equador
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1241
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameNorth James Bay, Santigo Island, Equador
CoordinatesLat. (o)-0.2Long. (o)-90.83528Alt. (m)Depth (m)2.1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025996Metagenome199Y
F039094Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
GOS2244_10574821F039094GAGMTQEKKISLNVQEIGVLLSALQLLDHGDEHHIAKHYGSAPSLYNRLKEIYDEMDNSI
GOS2244_10574823F025996AGGAGMTPQLEMHIGELDKSIIALSKRKLKLLQEVNDINETISFLRQQQEQLTNV*

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