Scaffold GOS2241_1002011

Overview

Basic Information

• Taxon OID: 3300001945
• Scaffold ID: GOS2241_1002011
• Source Dataset Name: Marine microbial communities from Galapagos, Equador - GS026
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2679
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Galapagos, Equador
• Coordinates
  • Lat. (^o): 1.2641667
  • Long. (^o): -90.295
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2241_10020114	F006793	N/A	MTNYRSTNEEKEQRINEAADELAKGKRAMDVSKKLAKKYSVSIQQAREYVRSAKPVLTESISPNDRAYIFSKVMSCLEQDRLDARKEENLKDQTKSTAGMVKMVSLLTSIDQVGSWDSAYDHHLFKNFSEVKKKIKHNDLDSLDDSLPEGEIPF*
GOS2241_10020115	F016820	N/A	MTKKEFSYIVFSNSGENVEEIHGVYKDLEGATYGARSALSTLFPKHGDQAKIIRCEIISTEEAKKQHEDAKPKDLFEKADCEDGYCPLPTQQVS*
GOS2241_10020116	F012584	N/A	MKLKPKAEIIPENIFVLREDALPTTADMDPWGKIMVWRKDIGWSIIHVRDVMEFITMKHTHWTYTPDFPYNKSVTEL*
GOS2241_10020117	F037769	GAGG	MSYKQTESDKADEKLLRRLLTEEMPLQDATDIITHVFSNLIRWTYDDAVFHLTQVFNFTDEEADQLLSKHNIVCNSAPDLIMNPPPNFNATAPNDVKDFATNLWHARKHLLDAKKLISATALTPSDYDHQDDFQDALVQRMHLAEKFMEINKYIDEHLDFAKHYTPPQSS*