Scaffold GOS2226_1025688

Overview

Basic Information

• Taxon OID: 3300001943
• Scaffold ID: GOS2226_1025688
• Source Dataset Name: Marine microbial communities from Cape May, New Jersey, USA - GS010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1752
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Cape May, New Jersey, USA
• Coordinates
  • Lat. (^o): 38.94
  • Long. (^o): -74.685
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F013295	Metagenome	272	N
F038638	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2226_10256882	F013295	AGGAG	MKINNLTPKQFARREIIKYLRDLFDNPAKYIKNFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGEL*
GOS2226_10256885	F004343	GGAG	MTQHKEMIDEARRLLSTERENIPSMSKDFGKDYWLLTYPCGKIVKTYEDKRKKDVVIQESY*
GOS2226_10256887	F038638	GGGGG	MSYKVSYTQAQFKYINHMKETYGLRGDIEYPCSTRSHQDENGNWLLISPQGLKMAKVFKNGSIIT*