NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GOS2262_1019216

Scaffold GOS2262_1019216


Overview

Basic Information
Taxon OID3300001942 Open in IMG/M
Scaffold IDGOS2262_1019216 Open in IMG/M
Source Dataset NameMarine microbial communities from Polynesia - GS047
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1295
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NamePolynesia
CoordinatesLat. (o)-10.131389Long. (o)-135.44945Alt. (m)Depth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017147Metagenome / Metatranscriptome242N

Sequences

Protein IDFamilyRBSSequence
GOS2262_10192162F017147GGAGGVTNMLYEPLVSNDKKIFCMNWNVNEYFDNAEMTEELYNFWFNQELKYLLHLSNKKYIPEILLIDTKKRIIEFKWYNKNLNVMIENNTINKVKNWQKKIKAIKDDLEKDNIFKINMYPHTFFFDDNDNAYVMDLYGCTDKQTRYLDIKYLKPLIRTNRFDKFIINDQLDTHELYNETIKTNYAEWPGDFLNA*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.