Scaffold GOS2262_1017757

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2262_1017757

Scaffold GOS2262_1017757

Overview

Basic Information
Taxon OID	3300001942 Open in IMG/M
Scaffold ID	GOS2262_1017757 Open in IMG/M
Source Dataset Name	Marine microbial communities from Polynesia - GS047
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1832
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Polynesia
Coordinates	Lat. (^o)	-10.131389	Long. (^o)	-135.44945	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030123	Metagenome / Metatranscriptome	186	N
F096162	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2262_10177573	F030123	AGGAGG	MSAISTDGMDKWLDDAYPSLEKRKANMVYEIASLINDDPLSAPVLIEELVEILFDEQVDHIEDVIVNHFGVEVYPE*
GOS2262_10177578	F096162	N/A	MTTTDLTEDQLIELKSEFVEFKLNEMSFAELQDYVRAMMLLDIDPDPEILKDEIDAYDDFLYDILVPYVKGEENSYEILQEYIHERHENDWIDDV*

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