Scaffold GOS2262_1009066

Overview

Basic Information

• Taxon OID: 3300001942
• Scaffold ID: GOS2262_1009066
• Source Dataset Name: Marine microbial communities from Polynesia - GS047
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1732
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Polynesia
• Coordinates
  • Lat. (^o): -10.131389
  • Long. (^o): -135.44945
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018646	Metagenome / Metatranscriptome	234	Y
F023961	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2262_10090662	F023961	GAGG	MPNYIETDMKHDKEFFKKYINGKWEDSNKLYKEYMSWENRKFFVQEIKEFDRPLLRKMKEIWNYLGIRPRDFRCNFFRVLPGGELPLHTDVLSKSSVVIPITEMTGPLYFDDGTEVLYQNMTVINTKKAHGVKAPTVERIVFHMGLHDIPFESIKINDK*
GOS2262_10090664	F018646	AGG	MLLKREHLPPFKKLPYTFDYERINEIVRNMPEQGDDLKEKEGYGDLVGGKSAKLQKAFGLKFTSIEDAYQFLVNNDVAESELYEKDSKITKALGGRKMAWDYRSYVKPYENYIVKDKDGKYEVNGSPYKQIGLTEYNPDMEDRVYDKKIPKSRLDE