NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2219_1007366

Scaffold GOS2219_1007366


Overview

Basic Information
Taxon OID3300001941 Open in IMG/M
Scaffold IDGOS2219_1007366 Open in IMG/M
Source Dataset NameMarine microbial communities from Browns Bank, Gulf of Maine - GS003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)913
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameBrowns Bank, Gulf of Maine, Canada
CoordinatesLat. (o)42.85278Long. (o)-66.217224Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084846Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
GOS2219_10073661F084846N/AALKNPYCLGLLCPISISQYIAKKLIGLGFHASRELMNLIG*

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