Scaffold GOS2225_1033861

Overview

Basic Information

• Taxon OID: 3300001939
• Scaffold ID: GOS2225_1033861
• Source Dataset Name: Marine microbial communities from Block Island, New York, USA - GS009
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 974
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Block Island, New York, USA
• Coordinates
  • Lat. (^o): 41.09111
  • Long. (^o): -71.60222
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002933	Metagenome / Metatranscriptome	519	Y
F093485	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2225_10338612	F000332	N/A	MRWLLLLLLLGLVGAVAKNGCHVREFYGIAYTTHDPTQRHKEMMAWLDQNAGHCKSTEYLVIWNNLSEWAGTADSTWLRNKVVHGYKDALEREKK*
GOS2225_10338613	F002933	GAG	MIPPLYKWYPMVQPGGEPNRTDALERRAEKLTEDYKQALKMKKMDIKIDALEFELYVKKAERNQLSLEIFTNRKIDILV*
GOS2225_10338614	F093485	N/A	MVTAKKAPAKTPAKVAPVKRRTPKPKAEQTINVSVAAPTPVKAEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILHAITTQDKMPQLAK