Scaffold GOS2221_1018686

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2221_1018686

Scaffold GOS2221_1018686

Overview

Basic Information
Taxon OID	3300001938 Open in IMG/M
Scaffold ID	GOS2221_1018686 Open in IMG/M
Source Dataset Name	Marine microbial communities from Bedford Basin, Nova Scotia, Canada - GS005
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1520
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Bedford Basin, Nova Scotia, Canada
Coordinates	Lat. (^o)	44.690277	Long. (^o)	-63.637222	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007119	Metagenome / Metatranscriptome	357	Y
F051178	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2221_10186862	F051178	GAGG	MKKGKCTVCKKVFTVKKGESLIGKLGIIPVDLCKTHLKKVLSYDEMNLNDTRASV*
GOS2221_10186863	F007119	N/A	MIRGQVSKFQVLKDNKVLKEFDDAMDTAIFALNNEYGPGMDIYTNDKEASETWTHFDYKESL*

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