Scaffold GOS2221_1002186

Overview

Basic Information

• Taxon OID: 3300001938
• Scaffold ID: GOS2221_1002186
• Source Dataset Name: Marine microbial communities from Bedford Basin, Nova Scotia, Canada - GS005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1699
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Bedford Basin, Nova Scotia, Canada
• Coordinates
  • Lat. (^o): 44.690277
  • Long. (^o): -63.637222
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006492	Metagenome / Metatranscriptome	372	Y
F007652	Metagenome / Metatranscriptome	347	Y
F015852	Metagenome / Metatranscriptome	251	Y
F060835	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2221_10021861	F060835	N/A	MTYHTNPITREAIDKLLKKNASNQANLGTESTDLERFETKIKWAELLREIRSLDA
GOS2221_10021862	F015852	N/A	AIRLVKEFLPYILAFLLGLIVAWQGCNSEAKTITKVVERPVPTIKYVDRWRTDTVRFVSKELVTRYDTIYSDKIVIRLDTMLLIDTFKIVETWLTEVANYDTTVNDIRLTWSNYQNRTENLKVELRKKPLGWALGVHGLVGLQSDFVENYKPLFGVGLQATIKRTYFSANYGFNGQHFVGVGVGRNIIKR*
GOS2221_10021864	F006492	AGG	MEILIEAFTQYGIAGVFLGVLIFYLNKLTDIHRDERKDWQDANDRHVDKFSDVIADNTKALVEMRGELKENKCKM*
GOS2221_10021865	F007652	AGCAG	MNEIKYPEVRTYYICFDDERTEVKSYGWVEPNQVFQTIWIFDEFTDEAQWIAELLVWGIIPEIDEQGNIVL*