NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GOS2252_1026634

Scaffold GOS2252_1026634


Overview

Basic Information
Taxon OID3300001937 Open in IMG/M
Scaffold IDGOS2252_1026634 Open in IMG/M
Source Dataset NameMarine microbial communities from the Equatorial Pacific Ocean - GS037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1107
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameEquatorial Pacific Ocean
CoordinatesLat. (o)-1.9738889Long. (o)-95.014725Alt. (m)Depth (m)1.8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043452Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
GOS2252_10266342F043452AGGLERLRDGTVTASKLSAGFGEYTGIGTIVLSGIISATSLRGSGALLTGVSAGKFVSETAGIVTNTPVGINTSTVDDKDLTGIGNSFKGLYIGNGMLIHDSELTGTHYIGTSFRGVMAGPVTIGGTLTVDGNYVVV*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.