NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2252_1022735

Scaffold GOS2252_1022735


Overview

Basic Information
Taxon OID3300001937 Open in IMG/M
Scaffold IDGOS2252_1022735 Open in IMG/M
Source Dataset NameMarine microbial communities from the Equatorial Pacific Ocean - GS037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameEquatorial Pacific Ocean
CoordinatesLat. (o)-1.9738889Long. (o)-95.014725Alt. (m)Depth (m)1.8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042934Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
GOS2252_10227352F042934AGGAGMKSTLNSKDYVAFARKFVKETVDRMGVEELKDFAINAIHEDLQDVYDDLGQRGVFEDMQSWDEDVFFEVAEDFDLELEGVE*

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