Scaffold GOS2252_1013271

Overview

Basic Information

• Taxon OID: 3300001937
• Scaffold ID: GOS2252_1013271
• Source Dataset Name: Marine microbial communities from the Equatorial Pacific Ocean - GS037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1313
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Equatorial Pacific Ocean
• Coordinates
  • Lat. (^o): -1.9738889
  • Long. (^o): -95.014725
  • Depth (m): 1.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F013897	Metagenome / Metatranscriptome	267	Y
F040144	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2252_10132711	F013897	N/A	MTVNLSKDQLLNLMNAIDFATDNRYDYENYTIIRSGTLDLDPIRNILYNEYVKEDS*
GOS2252_10132713	F001479	AGGAG	MPKEMLFLCDVYTKWLKENNLPHLCASEILYGKDTMNKLSISQVYWLEHFISTWDIIATHA*
GOS2252_10132715	F040144	AGGAGG	MKNQLHEFYVTRKCTKMEYFTVKAESLEEAKYEAEHGYDYYNFDWEEFDYETVDIKEQEIPEQQLTLSGVF*