NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2252_1003943

Scaffold GOS2252_1003943


Overview

Basic Information
Taxon OID3300001937 Open in IMG/M
Scaffold IDGOS2252_1003943 Open in IMG/M
Source Dataset NameMarine microbial communities from the Equatorial Pacific Ocean - GS037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1975
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameEquatorial Pacific Ocean
CoordinatesLat. (o)-1.9738889Long. (o)-95.014725Alt. (m)Depth (m)1.8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y
F032291Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
GOS2252_10039432F032291GAGGMERPEGSDGETDHDVTVPPLDVGVTAVMAVFLTKDNELGLYVMDDGAMSLTAMVTEAVVLPPVLLAVIV*
GOS2252_10039433F032291AGGAVTAVGVPEIAPVEVSNERPAGRDGETDQLVTGPPLTLGVTVVMAVPLVNVKAFGLKLKEAGATSFTTIVTSAVLVPPVLLAVTV*
GOS2252_10039434F008747AGGVIAVGVPLIAPVELDKERPAGKDGETDQEMTVPPVEVGVTVVIAVPLVSVSELGL*
GOS2252_10039435F032291GAGGMAVGVPEMAPVDESSANPAGNEGETDHVVTVPPLDVGVTVVMAVPLVSVSELGLYDRDEGAMSFTVMLTVAVVLPPVLLPVMV*
GOS2252_10039436F032291N/AVEESSERPLGREGDTDQVVMAPPLDVGVTVVMAVPLVNVNAFGLYEIEEGAMSLTTMVRSAVVLPPVLLAVTV*

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