Scaffold GOS2252_1003943

Overview

Basic Information

• Taxon OID: 3300001937
• Scaffold ID: GOS2252_1003943
• Source Dataset Name: Marine microbial communities from the Equatorial Pacific Ocean - GS037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1975
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Equatorial Pacific Ocean
• Coordinates
  • Lat. (^o): -1.9738889
  • Long. (^o): -95.014725
  • Depth (m): 1.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2252_10039432	F032291	GAGG	MERPEGSDGETDHDVTVPPLDVGVTAVMAVFLTKDNELGLYVMDDGAMSLTAMVTEAVVLPPVLLAVIV*
GOS2252_10039433	F032291	AGGA	VTAVGVPEIAPVEVSNERPAGRDGETDQLVTGPPLTLGVTVVMAVPLVNVKAFGLKLKEAGATSFTTIVTSAVLVPPVLLAVTV*
GOS2252_10039434	F008747	AGG	VIAVGVPLIAPVELDKERPAGKDGETDQEMTVPPVEVGVTVVIAVPLVSVSELGL*
GOS2252_10039435	F032291	GAGG	MAVGVPEMAPVDESSANPAGNEGETDHVVTVPPLDVGVTVVMAVPLVSVSELGLYDRDEGAMSFTVMLTVAVVLPPVLLPVMV*
GOS2252_10039436	F032291	N/A	VEESSERPLGREGDTDQVVMAPPLDVGVTVVMAVPLVNVNAFGLYEIEEGAMSLTTMVRSAVVLPPVLLAVTV*