NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2220_1006498

Scaffold GOS2220_1006498


Overview

Basic Information
Taxon OID3300001936 Open in IMG/M
Scaffold IDGOS2220_1006498 Open in IMG/M
Source Dataset NameMarine microbial communities from Halifax, Nova Scotia, Canada - GS004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1742
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameHalifax, Nova Scotia, Canada
CoordinatesLat. (o)44.137222Long. (o)-63.644444Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018451Metagenome235Y
F043088Metagenome157N

Sequences

Protein IDFamilyRBSSequence
GOS2220_10064982F018451GAGMAVNKYIDVVSHNPKAVVPKDYKMNKIQHSPKVLEVKNGMLGFEFNGTYIVDPTLDETARFPVSAKTYYKISARDRDRMIKANIKV*
GOS2220_10064983F043088AGGAGMKRLDGIYRGYDIFEKDNVWKVELEGKTISTFDKIDGVDGKASCMTEIDRIKREDIRDREINIQRIDAQVKLDNNIKKARNNGS*

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