Scaffold GOS2220_1003003

Overview

Basic Information

• Taxon OID: 3300001936
• Scaffold ID: GOS2220_1003003
• Source Dataset Name: Marine microbial communities from Halifax, Nova Scotia, Canada - GS004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4372
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Halifax, Nova Scotia, Canada
• Coordinates
  • Lat. (^o): 44.137222
  • Long. (^o): -63.644444
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019754	Metagenome	228	Y
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F031699	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2220_10030031	F022313	N/A	MTYHYQPEQEYEQTKLERILKELQSIIKRENKRHMMDEHLSHSMRDLLEYEIIPLLEAEVNYDPTPTTAYDFFHQ*
GOS2220_10030034	F020110	N/A	MSTQQEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDITAAQAEIELSDDGPSLEEASEPINTNSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSVSPFA*
GOS2220_10030036	F019754	N/A	MNHDPDDFMLPSELEPAWPPSDDDIEAMELDAYDRQKLDDLIAEELWRESLPSVPTPAELNPNLK*
GOS2220_10030039	F031699	N/A	MTLSDAARELELYADNTEIWIKPVLQNLSKHHKRGNFSLDLAIHSIERYCLTPAAKQYNLENGSMTTPWHHIFPKAVRLEAAEVMARRYSAEFKLGNYW*