Scaffold GOS2220_1000754

Overview

Basic Information

• Taxon OID: 3300001936
• Scaffold ID: GOS2220_1000754
• Source Dataset Name: Marine microbial communities from Halifax, Nova Scotia, Canada - GS004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1417
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Halifax, Nova Scotia, Canada
• Coordinates
  • Lat. (^o): 44.137222
  • Long. (^o): -63.644444
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011254	Metagenome / Metatranscriptome	293	Y
F029901	Metagenome / Metatranscriptome	187	Y
F036782	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2220_10007541	F011254	N/A	TIPLPRTDIKDIKIGDESIKHCLNSGINTATGYEIWLHGDPAEYFSRIAECIAHEDLLRFKNLKNKYLITESWNEKVEGDFIPSSVRQFFAKGEGPHWYHKEDFHNLPYVEYEGPEIDISIDLDEDLTFVDKKFYGQGQCKSLKPQPVLPTIRLDQIKNQKLRNTMRQFGFTDILQMQYVELQPNSVLPIHKDDFTYEDGKHIIDGPTQLYCVLSGDPGGIKFKFKNAGLIDVSKPIFINNRRFVHSLVYTGDIPRGVLLAYGIRQAR*
GOS2220_10007542	F036782	N/A	MDISQLKKSADLSYDIAVAKRNALEKAHSRQVVVYREHLFRADPVTICLVRTLKESQDRFCVLDTNSNPVEIMDPAEFLSILVERNQESLNAYNQIYRTFTKKDA*
GOS2220_10007543	F029901	AGGA	MSRGVLLFCLDTEHTRYHKILERCVRLVKRNICKEITVVTDFATYQRMSPMGLINYKFIEPERGNKLNGRAWNNVDRHLAYE