Scaffold GOS2223_1012735

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2223_1012735

Scaffold GOS2223_1012735

Overview

Basic Information
Taxon OID	3300001935 Open in IMG/M
Scaffold ID	GOS2223_1012735 Open in IMG/M
Source Dataset Name	Marine microbial communities from Northern Gulf of Maine, Canada - GS007
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1616
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Northern Gulf of Maine, Canada
Coordinates	Lat. (^o)	43.63222	Long. (^o)	-66.84722	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020817	Metagenome	222	Y
F041492	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2223_10127352	F041492	N/A	MKAELIEKTDLLKMIEPQYLQDFKKWSVRDLRAHFCITHKIDGEYKNMKGYCFKCLTPLRPDYIQYENYCKDC*
GOS2223_10127353	F020817	N/A	MEPNNMIYLILKERHYSNIENSYDIVTSSKDIDVINNKLKGYQLINDDKQNSYSIVRYESPLLLTEEVA*

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