Scaffold EFB

Basic Information
Taxon OID	3300001919 Open in IMG/M
Scaffold ID	EFB_1000900 Open in IMG/M
Source Dataset Name	Elephant fecal microbiome from Asian Elephant baby in Hamburg Zoo, Germany
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001919 Open in IMG/M

Scaffold ID

EFB_1000900 Open in IMG/M

Source Dataset Name

Elephant fecal microbiome from Asian Elephant baby in Hamburg Zoo, Germany

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39749
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (34.62%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

39749

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (34.62%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Asian Elephant Fecal → Asian Elephant Fecal Microbial Communities From Hamburg Zoo, Germany

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Asian Elephant Fecal → Asian Elephant Fecal Microbial Communities From Hamburg Zoo, Germany

Source Dataset Sampling Location
Location Name	Hagenbeck zoo/Hamburg, Germany
Coordinates	Lat. (^o)	53.595256	Long. (^o)	9.941572	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hagenbeck zoo/Hamburg, Germany

Coordinates

Lat. (^o)

53.595256

Long. (^o)

9.941572

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F064725	Metagenome	128	N
F077313	Metagenome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
EFB_100090013	F077313	N/A	MSKYVIKRKIPKYQKAGEVDPVMPGNVVGLQGLGVEPLVSSTRIGLDIQQPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMRYKDGGGVYLGSNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEEGTKVITDDTTIESDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSKAINDSNETVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINADERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYNTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEDQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVVPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNVGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLNQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
EFB_100090016	F050794	GGA	MQLDSFLHRKIIQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNKRLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKNMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMKIKKLTLSDIKKVVMMMEDRYSYISSI*
EFB_10009003	F064725	GAG	MTIRGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCTADKYWDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold EFB_1000900

Overview

Ecosystem & Geography

Associated Families

Sequences