Scaffold JGI24731J21663_1000416

Overview

Basic Information

• Taxon OID: 3300001914
• Scaffold ID: JGI24731J21663_1000416
• Source Dataset Name: Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46434
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (31.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Metamonada → Parabasalia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location

• Location Name: Espanola, New Mexico, United States
• Coordinates
  • Lat. (^o): 35.9918
  • Long. (^o): -106.0796

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065191	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24731J21663_10004161	F065191	AGG	MLVTIETDFFYDKSFNLNVTFFLLMPEVVFQCQDRTKHVEKSVLLCLKRYVNDHFTKDRIVLSDSCDFDVFCHFIDFLESGHIPSDRNDQIGVINLLREWESHFGIVDSFRFR
JGI24731J21663_100041635	F065191	N/A	MPEVVFQCQDRTKLVEKGVLSCLKRFRDDYFTKDRIVLSDSCDFDVFCHFIDFLESGHIPSDRNDQIGVINLLREWESHFGIVDSFRF