Scaffold JGI24158J21664_10050834

Overview

Basic Information

• Taxon OID: 3300001913
• Scaffold ID: JGI24158J21664_10050834
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4040
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061343	Metagenome	132	N
F067192	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24158J21664_100508346	F067192	N/A	LIFINLVYAKHSMEMETDSINYEPPTKTPKIVVQQYPSLYVKLHLTGLFDIQQAQSIIRSEPSTQRDAIPLLFRQMAFNLSFVAITEEEYVMINRSIREILDWKPQKIPYLQLFVKNSLLRRAILNRACMLFSSFAELPPCCIGIRIKSNKGKEEYWQKQHVTALRRVVWNFILNELDPIPPHVRMFLSTELKLIANQEIPTSPVTSSYHQTMANKKPQKSQVKDFIIIKFFLFTITKTRLNLFICRLKQLHYNKTP*
JGI24158J21664_100508347	F061343	GAG	MDLAQFCEILNRVSRTEENKENVPPSVPTAPKEQPTQSNDQRVPYPWGWLHNQIPFIQDAVIKFSTNHSLVNAYKFWEVDSDTYVVEHDYINTFIVKITLYQAMFLSQIQIPAIIILVPSSDEQFKLLFRISTFLAKHDDLSPCVFHLQIQPENAPKPSDSALQTHKHIVSLVLMNAPMLPKSVLTKMRQFLVALEAIAEKNSENNPPTNPLA*