NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24158J21664_10033435

Scaffold JGI24158J21664_10033435


Overview

Basic Information
Taxon OID3300001913 Open in IMG/M
Scaffold IDJGI24158J21664_10033435 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5827
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023241Metagenome211Y
F071745Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
JGI24158J21664_100334351F023241N/AMEENPSKNTNRALRDTNADKTTVLLSHLRNNYAFI
JGI24158J21664_100334352F071745GAGMSLNTKQKALCQLANTELLPHGDKEKGNTKKMTKARLGLMP*

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