NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24158J21664_10009651

Scaffold JGI24158J21664_10009651


Overview

Basic Information
Taxon OID3300001913 Open in IMG/M
Scaffold IDJGI24158J21664_10009651 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12885
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048631Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
JGI24158J21664_1000965116F048631AGAAGLGKTQIQMRFYKLLWVAKTQLESVTRDNGGLSRKIHFGTTAGMRLNHHGNFKVQRFQLFE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.