NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24158J21664_10000871

Scaffold JGI24158J21664_10000871


Overview

Basic Information
Taxon OID3300001913 Open in IMG/M
Scaffold IDJGI24158J21664_10000871 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30953
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (25.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028033Metagenome193Y
F068219Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
JGI24158J21664_100008711F028033N/AMPTLSFHGQRXLSTDLQLQQKVQNHTATSNCWLTRRQVGAKGSVIPPILNCKYSSVGQKLL*
JGI24158J21664_100008712F068219N/AMKSFFNSLYTITKPQKKLKATPNAVDLAMDLLLSSQAIKHRGESAYLSPI*

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