Scaffold JGI24729J20445_1003050

Overview

Basic Information

• Taxon OID: 3300001866
• Scaffold ID: JGI24729J20445_1003050
• Source Dataset Name: Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5501
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaB.Bin039 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location

• Location Name: Espanola, New Mexico, United States
• Coordinates
  • Lat. (^o): 35.992
  • Long. (^o): -106.0797

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103319	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24729J20445_10030502	F103319	GGAGG	MADSYNSIGHHPKSGYMTSEGCALHNLSGLDLVIDIAGVYFPLRSLQYAANHNISDEHGTGSHDPYALTNQEHTYTGSFSYASFLVNGDNVLTQKDVLMLSQLLHDQADEGVSKYFDIYIIEVQGKRTPGSGQTFEELVETTLQNESMVGYIEALVDAKVTKVNRDIPEKNTVISSREFKFSYKIPR*