NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24422J19971_10006224

Scaffold JGI24422J19971_10006224


Overview

Basic Information
Taxon OID3300001854 Open in IMG/M
Scaffold IDJGI24422J19971_10006224 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7423
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.6478111Long. (o)-77.1112083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079544Metagenome115Y
F104375Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
JGI24422J19971_1000622410F104375GGAGMSCPQCHGPLVFPNGLRGEIVCKKCGLVISRGQNSQGFTKWAPEWFSNWNESDSDTLREWMTTLRTVSCQLNLPNFPYREETARVIKRKSDVLFRSQRFGKNKREAIAALVHLVLRKYNEIRPLKEICETLSLDHRLVTKYAWAMRKMTGFHRTFSPKDYLRKYGWKLTSNAELIQRAEQLLASLRKEISGNPVSLAAGAFYFVCKSRKMRMSKDEIGEAFNISGRTVYSNERRISRLMSTKSFEL*
JGI24422J19971_100062245F079544N/AVTEEKSLKLEILHDRRGISKVYTSLAFLLLVFSILTLLFLTFFNYNFAVQEQMRIEHERSQEKIVLTGLNLNETNLSEIRIKNTGTIEIKIRAIYVDNSFLCDPSTYNDTNIAPNNSSWIALPTGVAFEPEAKITATTERGVKTTEYEGPLVYKPAPPEWQYDPTRLYIGPLMLQFDAFWYRKTFQDGTPVPTESWLPGWSIQKGFGYCAWNITVMNIDDRNITITRFSSFNAVPNDTPSNELPWYLEPTNQTDLTQFLPVNQTRNIIYIWSVPKEEGTNSAQKMTLPECTCMVFLTFFGYFHEHDGTTTPYAQTIPFEAAITVTG*
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