Scaffold JGI24524J20080_1012236

Overview

Basic Information

• Taxon OID: 3300001853
• Scaffold ID: JGI24524J20080_1012236
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 994
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013135	Metagenome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24524J20080_10122362	F013135	AGAAGG	MADVELSEKAIEFEKQFEESVKKIEPVNSGLITKPDENDFNFWNTAGRLSLSAGQGVVNAVEEQGDFLDENIVPLGGLEFGDEDGKFTFKDLIPKYVTPKKWKEGGYSQQRNLPVFHKPEGIGENLTEGAARFVTGFIGPSKILKGVGLGVI*