Scaffold JGI24524J20080_1000517

Overview

Basic Information

• Taxon OID: 3300001853
• Scaffold ID: JGI24524J20080_1000517
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10521
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005195	Metagenome	409	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24524J20080_10005173	F005195	AGGAGG	MSLKALLRAGKELLKAKKPSATPTTGQQTNQITYTPKPSQAQAKELVTQELKNPPVVLKKTKPLQMGDDMAPAFGSSTYDWAMRMGRSKYTADEWLDHLTSTRKVNFKIFGKPATKTVREQKRFKYDSGPFAGKEVNVSKEELFDSNLAVFNEAGDLTGGLLYAAKKFGLKLDANEVGAMIKLNPINRLKPIELGVNKGAQEAFDVASKNAKNTVRDLQVKYKGNEEIKQSLDDMQYYLDADGGVPTKSALRAINDSLKRTTPDLPMEERKVLNKVIGDINNKAGPMQATKTKYGTESNYTLQGGKDYRETVFTLPEDIVTNSNLRNKGGHFTDVIGDTNNIYHIRYDTRFTPDGKKVFMINEIQSDVNQSIAKSLTKAQQLSGEARLNPFNAEIELNLLVSQRGKMLKDLDEALSRNEFGRVNAISASMKDINTKLQRLTSQRDRFEASTTKDYFPMVEADSYGDHAIKYLMQKAARENVDYVAVAPFDXVSFRQGYKAGNERFYGYANGKGIGKKGKAVLPDVMGKNARFYGSKAGPTKISLSDPTKIYKKVSDDKFKYPSDHPLKGKEIKSSYHSEAVDSPLKGFKNIPEGDPRLYFDAYAIKVVPLMRNTQKTYKSKGGLVVDMFKPIRYN*